IAnnotate is the only one currently able to read Windows proprietary formats well. Apps with good support for formats such as mathematical formulae More about apps with content-search here. It has a content-search and indexation, may create downtime in copying DropBox things elsewhere - a lot of small files apparently. Apps prone in searching such as Content-search over all documents Side-by-side app with cool intention but works badly, unfortunately no better alternative yet. GoodReader app with things such as Light-adjusting Papers app with things such as reference-lookup, grading and academic preview ![]() You may find this thread here useful if you are new with iPad, iOS i or Apple ecosystem. ![]() Please, feel free to suggest better categorization. Despite lacking some objectiveness here I will outline apps in categories below. New features always have trade-offs - often in hard-to-measure things such as usability and accessibility. Limitations such as area and virtual keyboard set clear design-guidelines such as avoiding extraneous things. I think if you want to do things very well in iPad you need to follow some sort of Unix-philosophy: less is more. I will list below more specific apps in iPad but many of them such as PDF Expert have iPhone version so iOS apps in that sense. This is probably because the iPad's screen-area is limited, better to do a specific thing very well instead of many things poorly. There are general program such as GoodReader that are not good in small things such as searching or merging but good in reading with things such as light-adjustion. I am trying to summarize and categorize here things.
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